SeqAn3 3.2.0-rc.1
The Modern C++ library for sequence analysis.
matrix_coordinate.hpp
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1// -----------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6// -----------------------------------------------------------------------------------------------------
7
13#pragma once
14
15#include <concepts>
16#include <type_traits>
17
22
23namespace seqan3::detail
24{
29template <typename index_type>
31 requires (std::integral<index_type> || simd_index<index_type>)
34{
37};
38
44template <std::signed_integral index_type>
46
48template <std::unsigned_integral index_type>
50
52template <simd_index index_type>
55
60template <typename index_type>
62 requires (std::integral<index_type> || simd_index<index_type>)
65{
68};
69
75template <std::signed_integral index_type>
77
79template <std::unsigned_integral index_type>
81
83template <simd_index index_type>
86
91template <typename index_t>
93 requires (std::integral<index_t> || simd_index<index_t>)
96{
100 constexpr matrix_index() = default;
101 constexpr matrix_index(matrix_index const &) = default;
102 constexpr matrix_index(matrix_index &&) = default;
103 constexpr matrix_index & operator=(matrix_index const &) = default;
104 constexpr matrix_index & operator=(matrix_index &&) = default;
105 ~matrix_index() = default;
106
111 constexpr matrix_index(row_index_type<index_t> const row_idx, column_index_type<index_t> const col_idx) noexcept :
112 row{row_idx.get()},
113 col{col_idx.get()}
114 {}
115
132 template <seqan3::arithmetic scalar_index_t>
134 column_index_type<scalar_index_t> const col_idx) noexcept
136 requires simd_index<index_t>
138 // Note the explicit type conversion is necessary since the scalar type might be of smaller bit size.
139 : row{simd::fill<index_t>(static_cast<typename simd_traits<index_t>::scalar_type>(row_idx.get()))},
140 col{simd::fill<index_t>(static_cast<typename simd_traits<index_t>::scalar_type>(col_idx.get()))}
141 {}
142
146 template <std::integral other_index_t>
148 requires (!std::same_as<other_index_t, index_t>)
150 explicit constexpr matrix_index(matrix_index<other_index_t> other) noexcept
151 : row{static_cast<index_t>(other.row)}, col{static_cast<index_t>(other.col)}
152 {}
154
156 template <std::integral first_index_t, std::integral second_index_t>
157 constexpr explicit operator std::pair<first_index_t, second_index_t>() const noexcept
158 {
159 return std::pair{static_cast<first_index_t>(col), static_cast<second_index_t>(row)};
160 }
161
162 index_t row{};
163 index_t col{};
164};
165
172
174template <std::integral row_index_t, std::integral col_index_t>
176 requires std::common_with<row_index_t, col_index_t>
180
182template <simd_index index_t>
185
189
194template <simd_index index_t>
196
200} // namespace seqan3::detail
Provides algorithms to modify seqan3::simd::simd_type.
CRTP base class to declare a strong typedef for a regular type to avoid ambiguous parameter settings ...
Definition: strong_type.hpp:175
@ row
The corresponding alignment coordinate will be incrementable/decrementable in the row index.
Refines the seqan3::simd::simd_concept requiring the underlying scalar type to model std::integral.
The internal SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
Provides basic data structure for strong types.
A strong type for designated initialisation of the column index of a matrix.
Definition: matrix_coordinate.hpp:34
column_index_type(index_type) -> column_index_type< std::ptrdiff_t >
Deduces an signed integral type to std::ptrdiff_t.
column_index_type(index_type) -> column_index_type< size_t >
Deduces an unsigned integral type to size_t.
column_index_type(index_type) -> column_index_type< index_type >
Deduces the template argument from a simd vector index type.
A representation of a location or offset within a two-dimensional matrix.
Definition: matrix_coordinate.hpp:96
index_t row
The row index.
Definition: matrix_coordinate.hpp:162
matrix_index(row_index_type< row_index_t >, column_index_type< col_index_t >) -> matrix_index< std::common_type_t< row_index_t, col_index_t > >
Deduces the index type from the common type of both index types.
constexpr matrix_index(row_index_type< index_t > const row_idx, column_index_type< index_t > const col_idx) noexcept
Construction from strongly typed row index and column index.
Definition: matrix_coordinate.hpp:111
matrix_index() -> matrix_index< std::ptrdiff_t >
Deduces the default index type to std::ptrdiff_t.
constexpr matrix_index(row_index_type< scalar_index_t > const row_idx, column_index_type< scalar_index_t > const col_idx) noexcept
Construction from strongly typed row index and column index over a scalar type when the index is a si...
Definition: matrix_coordinate.hpp:133
matrix_index(row_index_type< index_t >, column_index_type< index_t >) -> matrix_index< index_t >
Deduces the index type from the simd vector index type.
~matrix_index()=default
Defaulted.
constexpr matrix_index & operator=(matrix_index &&)=default
Defaulted.
constexpr matrix_index & operator=(matrix_index const &)=default
Defaulted.
constexpr matrix_index(matrix_index< other_index_t > other) noexcept
Construction from other matrix_index with different integral type.
Definition: matrix_coordinate.hpp:150
constexpr matrix_index(matrix_index const &)=default
Defaulted.
constexpr matrix_index()=default
Defaulted.
index_t col
The column index.
Definition: matrix_coordinate.hpp:163
constexpr matrix_index(matrix_index &&)=default
Defaulted.
A strong type for designated initialisation of the row index of a matrix.
Definition: matrix_coordinate.hpp:65
row_index_type(index_type) -> row_index_type< std::ptrdiff_t >
Deduces an signed integral type to std::ptrdiff_t.
row_index_type(index_type) -> row_index_type< index_type >
Deduces the template argument from a simd vector index type.
row_index_type(index_type) -> row_index_type< size_t >
Deduces an unsigned integral type to size_t.
seqan3::simd::simd_traits is the trait class that provides uniform interface to the properties of sim...
Definition: simd_traits.hpp:41
Provides concepts that do not have equivalents in C++20.
Provides seqan3::simd::simd_concept.